SUDS project

Visual Storytelling Techniques to Support Engagement and Learning on NASA’s Earth Information Wall Display

Research description:

Scientific agencies like NASA provide vast data about Earth and society, but this information must be delivered in ways that enable public understanding and informed decision-making. This project investigates how to make data science insights digestible, engaging, and informative through two advances: LLM-powered annotation pipeline: Extract relevant annotations to overlay on dashboards, enhancing comprehension and sensemakin; and, Web-based rendering pipeline: Display annotations to support effective data storytelling.
 
The SUDS Scholar will contribute to an existing codebase using secured infrastructure and data sources. They will gain hands-on experience with machine learning and NLP (LLMs, prompt engineering), web development (HTML/CSS, TypeScript, React), and version control (Git/GitHub). Additional exposure includes data visualization, human-computer interaction principles, and collaborative research practices. Selected students will join the DGP lab at the University of Toronto, working with collaborators from Inria (France) and NASA SVS. They will participate in lab meetings, reading groups, and seminars, developing technical expertise while learning to communicate across interdisciplinary teams. This project offers training in cutting-edge computing technologies applied to social good, preparing students for impactful careers at the intersection of AI, visualization, and public engagement.

Year: 2026

Researcher:
Fanny Chevalier, University of Toronto, Faculty of Arts and Science, Department of Computer Science

Student:
Dion Barja, University of Manitoba

Through SUDS, undergraduate students engage in hands-on research focused on data sciences and AI methodology applications.

Mining Microbial Genomes for New Chemicals using AI

Research description:

Marine microbes are prolific yet underexplored producers of bioactive compounds and the source of new anti-cancer and antimicrobial drugs. A key challenge is mining microbial chemistry at scale to identify and prioritize novel compounds. New ‘omics techniques have created unprecedented amounts of data on the chemistry and genomes of microbes. However, this data remains difficult to interpret. Current computational methods to link biosynthetic gene clusters (BGCs) to their products largely operate in low-data regimes and cannot reliably identify metabolites from genomes. Here, we will use cutting-edge machine learning techniques to mine multi-omics data.  This project will lay the foundations towards building a genomic predictor for chemical potential using protein language models and novel BGC representations and using transformer-based models for metabolomics data and multi-modal contrastive learning to directly link BGCs with chemical features. Our goal is to create new tools to explore and mine ‘omics data to expedite the discovery of new microbial chemistry and therapeutics. This project will be in collaboration with Prof. Ben Sanchez-Lengeling. 
 
The SUDS Scholar will analyze genomics and metabolomics data from a collection of 150 marine bacteria. The goal is to create a pipeline to make ‘omics data AI-ready, though data organization; setting up data schema and data manuals; and performing exploratory data analysis (EDA).

Year: 2026

Researcher:
Rachel Gregor, University of Toronto, Faculty of Applied Science and Engineering, Department of Chemical Engineering and Applied Chemistry

Student:
Jessica Anirisaihan, University of Toronto

Through SUDS, undergraduate students engage in hands-on research focused on data sciences and AI methodology applications.

Inferring the Invisible: Using AI to Map Dark Matter in the Universe

Research description:

Dark matter makes up most of the matter in the Universe, yet it cannot be seen directly—it interacts only through gravity. This project uses artificial intelligence and data science techniques to uncover the hidden structure of dark matter by analyzing the motion of stars in dwarf galaxies and stellar streams. These small galaxies and elongated star systems act as “gravitational detectors,” responding to the unseen dark matter around them. The SUDS Scholar will apply simulation-based inference (SBI), a cutting-edge approach in machine learning that uses simulated data to train neural networks to infer the physical parameters of complex systems. By comparing simulated and real astronomical datasets, the team will learn how to extract the dark matter distribution and test different theories about its properties.This project offers hands-on experience in modern data-driven astrophysics, combining tools from AI, Bayesian statistics, and computational modeling. Students will gain exposure to real astronomical survey data, explore uncertainty estimation, and contribute to developing machine learning models that help us understand one of the Universe’s greatest mysteries.

Year: 2026

Researcher:
Ting Li, University of Toronto, Faculty of Arts and Science, David A. Dunlap Department of Astronomy and Astrophysics

Students:
Chun On Yu, University of Toronto
Nawaf Bandar Saeed Alrefaie
King Abdullah University of Science & Technology
Yazan Mohammed Bakhshwin,
King Abdullah University of Science & Technology

Through SUDS, undergraduate students engage in hands-on research focused on data sciences and AI methodology applications.

Hamiltonian Optimization and Sampling for Deep Learning

Research description:

In the last decade, deep learning models have become an integral part of our lives, from image recognition software to large language models such as ChatGPT. These models are often overparameterized, with many (many!) more parameters than training examples. While this naively implies that these models should just memorize their training data, instead, we find that they generalize extremely well, finding solutions that are often even better than more traditional underparameterized models. This almost-magical ability to generalize rather than memorize turns out to be (in part) the result of how we optimize and sample from these overwhelmingly large models’ parameters. Motivated by this behaviour, this project will investigate new variants of optimization and/or sampling methods based on ideas from Hamiltonian optimization, dynamics, and optics, to see how well they perform across a wide class of problems (potentially including large language models). This will involve a combination of theoretical work as well as empirical studies of how these methods perform on various methods on benchmarks, their stability and dynamics under various conditions, and the implicit and/or explicit regularization that they provide.This project will be co-supervised with Prof. Ricardo Baptista, Department of Statistical Sciences, Faculty of Arts & Science, University of Toronto. 
 
The SUDS Scholar will be actively involved in pursuing a combination of both (1) theoretical work and literature review, as well as (2) conducting empirical studies of how these methods perform (including their stability, dynamics, and regularization properties) across various benchmarks.

Year: 2026

Researcher:
Joshua Speagle, University of Toronto, Faculty of Arts and Science, Department of Statistical Sciences

Students:
Chuxuan Ai, University of Toronto
Yasir Abdullah M Alsugair, King Abdullah University of Science & Technology

Through SUDS, undergraduate students engage in hands-on research focused on data sciences and AI methodology applications.

Benchmarking Astronomical Foundation Models

Research description:

Driven by advances in AI, several groups in astronomy are developing large Foundation Models for Astrophysics, large general purpose ML models for performing many tasks. Our group is involved these efforts, in particular connecting these models to natural language models (LLMs). Little work has been done, however, in evaluating the performance of these models. The aim of this problem is to develop a set of benchmarks across a range of astrophysical applications (gravitational lending, galaxy morphology, photometric redshift determination, stellar parameter determination) to test the performance of current and future models.

The SUDS scholar would work on gathering relevant benchmark data sets from the astronomical literature, starting from some that we have already used and then expand to others, write code to run these through existing astronomical foundation models (such as AION-1), and create summary statistics and visualizations of the foundation models’ performance on these benchmarks. Finally, the SUDS Scholar will create an easily accessible resource for others to run the benchmarks on their own models (e.g., sharing it on huggingface).

Year: 2026

Researcher: Jo Bovy, University of Toronto, Faculty of Arts and Science, David A. Dunlap Department of Astronomy and Astrophysics

Students:
Yixuan Cheng, University of Toronto
Reem Omair A Alshahrani, King Abdullah University of Science & Technology

Through SUDS, undergraduate students engage in hands-on research focused on data sciences and AI methodology applications.