Hagar Labouta

Multiomics data analysis and visualization to investigate cross-talk between cells in integrated organ-on-a-chip models

Research description:

To develop safe nanoparticles for use during pregnancy, we first need to understand the cross-talk (communication) between cells of the placenta (barrier between the mother and the baby) and other cells from the mother at different pathological conditions, e.g. cancer. We developed an organ-on-a-chip model to mimic this environment in the lab and investigate the cross-talk between cells. We used this model to generate protemic and transcriptomic data. A data science student will work with a graduate student and help analyze this big data and enable different visualization approaches of the data. This a great opportunity for the student to work in an interdisciplinary team that works at the intersection between nanotechnology and microfluidics, and learn new wet-lab techniques, and apply their knowledge in data science to solve real-case problems.

Year: 2024

Researcher:
Hagar Labouta, Unity Health Toronto

Students: 
Paulette Peram, McGill University
Aisha Soliman Alsomiry, King Abdullah University of Science & Technology

Through SUDS, undergraduate students engage in hands-on research focused on data sciences and AI methodology applications.

Multiomics data analysis and visualization to investigate cross-talk between cells in integrated organ-on-a-chip models

Research description:

To develop safe nanoparticles for use during pregnancy, we first need to understand the cross-talk (communication) between cells of the placenta (barrier between the mother and the baby) and other cells from the mother at different pathological conditions, e.g. cancer. We developed an organ-on-a-chip model to mimic this environment in the lab and investigate the cross-talk between cells. We used this model to generate protemic and transcriptomic data. A data science student will work with a graduate student and help analyze this big data and enable different visualization approaches of the data. This a great opportunity for the student to work in an interdisciplinary team that works at the intersection between nanotechnology and microfluidics, and learn new wet-lab techniques, and apply their knowledge in data science to solve real-case problems.

Year: 2025

Researcher:
Hagar Labouta, Unity Health Toronto

Students: 
Rayan Ramadan, University of Toronto
Ali Hani Alsaad, King Abdullah University of Science & Technology

Through SUDS, undergraduate students engage in hands-on research focused on data sciences and AI methodology applications.

Machine Learning for Predicting Nanoparticle Responses in Organ-on-a-Chip Models

Research description:

Understanding how different nanoparticles interact with biological tissues is essential for developing safe and effective nanomedicines. In our lab, we use organ-on-a-chip models that mimic the human placenta and other organs to study how nanoparticles behave under realistic physiological conditions. This project will apply machine learning to experimental data collected from these models to predict cellular responses to nanoparticles based on their properties and exposure conditions.

The student will work with a graduate student to clean, organize, and analyze datasets, build predictive models, and create clear visualizations to interpret findings. This project offers an exciting opportunity to apply data science skills to a real-world biomedical challenge at the intersection of nanotechnology, microfluidics, and computational modeling.

Year: 2026

Researcher: 
Hagar Labouta, Unity Health Toronto

Student:
Joshua Campbell, McMaster University

Through SUDS, undergraduate students engage in hands-on research focused on data sciences and AI methodology applications.