SUDS project

A Comparison of Missing Data Methods for Clinical Trials

Research description:

In randomised controlled trials (RCTs), patients can experience low tolerance to the treatment or adverse events and drop out of the study after discontinuing the treatment and therefore result in failure to measure the study outcomes. Consequently, patients with measured data may no longer be representative of the initial study population and this post-randomisation selection bias can partially invalidate randomisation. Ignoring or inadequately handling missing data can lead to estimation biases and loss of statistical power. Although a substantial literature on missing data has been developed, there remains variability in practice on strategies for handling missing data in clinical research and the lack of consensus on which approach was desired under different primary statistical analyses and missing data mechanisms.

The objectives of this study are to compare common approaches to the analysis of missing data in RCT via a series of statistical simulation studies and to provide recommendations on how to handle missing data in RCT. In our simulation study, we will consider continuous, binary, and repeatedly measured study outcomes, and compare missing data methods including complete-case analysis, imputation, and methods that do not require a complete data set. The DSI-SUDS trainee working on this project will gain knowledge and expertise in missing data, the design and analysis of standard RCT, and conducting statistical simulation study in R statistical software.

Year: 2023

Researcher:
Kuan Liu, Institute of Health Policy, Management, and Evaluation, Dalla Lana School of Public Health, University of Toronto

Student: 
Bilin Nong, University of Toronto

Through SUDS, undergraduate students engage in hands-on research focused on data sciences and AI methodology applications.

A Climate Downscaling Workflow for Engineering and Climate Impacts Analysis: UTCDW

Research description:

Built and energy infrastructure are sensitive to the impacts of global warming and climate change including increased cooling loads, dangerous heat waves, damaging flooding in cities, permafrost degradation, and other impacts. To model, quantify, and predict these impacts for engineering analysis requires “downscaling”, which relates  available climate information (e.g. weather station data, model output) to the requirements of engineering (site specific information, design requirements), while accounting for incompatible sampling, errors, and uncertainty. Downscaling is a workflow of data processing and model calibration against observations that increasingly uses machine learning and modern data science. We are developing tools to accelerate research and applications using downscaling for engineering applications. These tools are packaged in the UofT Climate Downscaling Workflow (UTCDW), a set of guides, software, and visuals to help integrate downscaling into engineering research and design. 


The SUDS Scholar will test, apply, and extend the data-science methods in UTCDW for engineering problems related to structural wind loads arising from extreme wind events, as well as impacts of climate change on battery electric vehicle range and on biodiesel viability. The project will demonstrate how the UTCDW can effectively translate climate science knowledge into actionable information.

Year: 2023

Researcher:
Paul Kushner, Department of Physics, Faculty of Arts and Science, University of Toronto

Student: 
Tsz Ying Chan, University of Toronto

Through SUDS, undergraduate students engage in hands-on research focused on data sciences and AI methodology applications.

Automated Text Analysis of Fake News and Biased News

Research description:

Using Big Data, text analysis, and machine learning techniques, we will analyze how fake news and real news differ in their moral themes, cognitive styles, antiscience attitudes, emotional valence, and other psychological characteristics. Likewise, we will analyze how ideologically more biased news and less biased news differ on the various dimensions. To answer these questions with rigor and robustness, we will analyze about 7 million news articles from about 500 media outlets. The outlets vary widely in ideological leaning, from far left to far right. They also vary in veracity, from mostly fact-checked to mostly fake, conspiracy, and pseudoscience news. Our team has already completed preprocessing of all the news articles.

The SUDS Scholar will apply automated text analysis and machine learning techniques to these articles in order to identify linguistic patterns and biases depending on how fake or real and how left-leaning or right-leaning the media outlet is.

My last SUDS Scholar (Summer 2023) worked on the first stage of this project, presented our work at the Showcase, and won one of the two Best Oral Presentation Awards. This year’s SUDS Scholar (Summer 2024) will work on the full-fledged implementation of the project.

Year: 2024

Researcher:
Spike W.S. Lee, Joseph L. Rotman School of Management, University of Toronto

Students: 
Christopher Cao, University of Toronto
Rachel Way, Simon Fraser University

Through SUDS, undergraduate students engage in hands-on research focused on data sciences and AI methodology applications.

Meta-analysis of randomized control clinical trial data

Research description:

Year: 2024

Researcher:
Charlie Boone, Terrence Donnely Centre for Cellular & Biomedical Research Temerty Faculty of Medicine, University of Toronto

Students: 
Hassan Alsayhah, King Abdullah University of Science & Technology

Through SUDS, undergraduate students engage in hands-on research focused on data sciences and AI methodology applications.

Multiomics data analysis and visualization to investigate cross-talk between cells in integrated organ-on-a-chip models

Research description:

To develop safe nanoparticles for use during pregnancy, we first need to understand the cross-talk (communication) between cells of the placenta (barrier between the mother and the baby) and other cells from the mother at different pathological conditions, e.g. cancer. We developed an organ-on-a-chip model to mimic this environment in the lab and investigate the cross-talk between cells. We used this model to generate protemic and transcriptomic data. A data science student will work with a graduate student and help analyze this big data and enable different visualization approaches of the data. This a great opportunity for the student to work in an interdisciplinary team that works at the intersection between nanotechnology and microfluidics, and learn new wet-lab techniques, and apply their knowledge in data science to solve real-case problems.

Year: 2024

Researcher:
Hagar Labouta, Unity Health Toronto

Students: 
Paulette Peram, McGill University
Aisha Soliman Alsomiry, King Abdullah University of Science & Technology

Through SUDS, undergraduate students engage in hands-on research focused on data sciences and AI methodology applications.